STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdhGlutamate dehydrogenase, NAD-specific; KEGG: bfs:BF3437 8.0e-210 gdhB; glutamate dehydrogenase K00260; Psort location: Cytoplasmic, score: 9.97; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (444 aa)    
Predicted Functional Partners:
EEC96583.1
Glutamate synthase central domain protein; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
  
 0.999
EEC96556.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 8.3e-109 glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
  
 0.999
EEC96401.1
Transketolase, C-terminal domain protein; KEGG: bth:BT0312 0. 2-oxoisovalerate dehydrogenase alpha subunit / 2-oxoisovalerate dehydrogenase beta subunit K00166:K00167.
  
 
 0.972
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.915
cobB-2
Transcriptional regulator, Sir2 family; KEGG: pgi:PG0004 2.6e-78 NAD-dependent deacetylase K01463; Psort location: Cytoplasmic, score: 8.96; Belongs to the sirtuin family. Class III subfamily.
   
 0.900
gltA
KEGG: bfs:BF0926 3.8e-210 putative NADPH-dependent glutamate synthase K00266; Psort location: Cytoplasmic, score: 9.97.
  
 0.848
gcvP
KEGG: pgi:PG1305 0. gcvP; glycine cleavage system P protein K00282:K00283; Psort location: Cytoplasmic, score: 8.96; Belongs to the GcvP family.
   
 0.845
EEC95811.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: btl:BALH_0703 3.2e-135 ndh; NADH dehydrogenase K00356; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.815
EEC95812.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
  
 
 0.815
EEC96581.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: bth:BT0552 3.6e-95 glutamate synthase, small subunit K00266; Psort location: Cytoplasmic, score: 9.26.
  
 0.802
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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