Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEC95286.1Hypothetical protein. (99 aa)    
Predicted Functional Partners:
EEC95283.1
Hypothetical protein; KEGG: lwe:lwe1470 2.2e-06 dnaG; DNA primase.
       0.737
EEC95284.1
Hypothetical protein.
       0.737
EEC95285.1
Hypothetical protein; KEGG: bam:Bamb_4258 1.9e-09 lysozyme K01185; Psort location: Cytoplasmic, score: 8.96.
       0.737
traN
Conjugative transposon TraN protein.
       0.721
EEC95282.1
Hypothetical protein.
       0.721
EEC95287.1
Hypothetical protein.
       0.671
traM
Conjugative transposon TraM protein.
       0.578
traK
Conjugative transposon TraK protein; Psort location: Cytoplasmic, score: 8.96.
       0.546
EEC95278.1
Hypothetical protein.
       0.546
EEC95279.1
Hypothetical protein.
       0.546
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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