STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC95306.1Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: sme:SMb21655 2.2e-50 lacZ1; probable beta-galactosidase protein K01190; Belongs to the glycosyl hydrolase 2 family. (888 aa)    
Predicted Functional Partners:
EEC95723.1
Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: bfr:BF0929 8.5e-50 beta-galactosidase K01190.
  
  
  0.690
EEC95307.1
Hypothetical protein.
       0.601
EEC98136.1
Glycosyl hydrolase family 2, sugar binding domain protein; KEGG: sus:Acid_4607 3.8e-15 beta-galactosidase K01190; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.508
valS
valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.495
EEC96329.1
YhcH/YjgK/YiaL family protein.
   
  0.478
EEC97285.1
Hypothetical protein; KEGG: bfr:BF4019 9.0e-22 beta-galactosidase precursor K01190.
 
 
  0.453
EEC98233.1
Hypothetical protein; KEGG: sma:SAV1325 1.4e-06 bga2; putative beta-galactosidase K01190.
 
 
  0.434
EEC96613.1
Hypothetical protein; KEGG: sde:Sde_0786 2.7e-10 arabinan endo-1,5-alpha-L-arabinosidase.
  
  
  0.430
EEC97291.1
Glycosyl hydrolase family 35; KEGG: xcv:XCV3214 6.4e-98 bga1; beta-galactosidase K01190.
 
 
  0.426
EEC95996.1
Hypothetical protein; KEGG: bfs:BF0029 8.0e-75 putative beta-galactosidase K01190.
 
     0.424
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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