STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC95216.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (99 aa)    
Predicted Functional Partners:
hsdR
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.639
hsdR-2
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.639
EEC96450.1
Type I restriction modification DNA specificity domain protein; KEGG: tel:tll2229 4.0e-41 type I site-specific deoxyribonuclease specificity subunit K01154; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.636
EEC95088.1
Hypothetical protein; KEGG: stm:STM4524 6.0e-31 hsdS; specificity determinant for hsdM and hsdR K01154.
  
 
 0.636
EEC95090.1
Hypothetical protein; KEGG: xoo:XOO3464 7.9e-14 type I restriction enzyme StySPI specificity protein K01154.
  
 
 0.636
EEC95060.1
Hypothetical protein; KEGG: pca:Pcar_2924 8.0e-36 restriction endonuclease S subunits-like K01154; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.636
EEC95215.1
Transcriptional regulator, BlaI/MecI/CopY family; KEGG: bcz:BCZK0993 2.8e-08 blaI; beta-lactamase (penicillinase) repressor K01467; Psort location: Cytoplasmic, score: 8.96.
    
  0.548
EEC96274.1
Hypothetical protein.
  
 
 0.497
EEC95213.1
Hypothetical protein; KEGG: sus:Acid_2285 8.9e-21 beta-lactamase K01467.
       0.440
EEC95214.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.440
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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