Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EEC95117.1Hypothetical protein. (374 aa)    
Predicted Functional Partners:
EEC95165.1
Peptidase, M23 family; KEGG: hpa:HPAG1_1492 2.6e-11 ToxR-activated gene K01463; Psort location: Cytoplasmic, score: 8.96.
     0.975
EEC94501.1
Putative DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.701
EEC95602.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
  
     0.626
EEC94686.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.598
EEC96750.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.581
mreD
Rod shape-determining protein MreD; Psort location: CytoplasmicMembrane, score: 9.46.
  
     0.576
EEC94626.1
Hypothetical protein.
  
    0.576
EEC98187.1
Psort location: OuterMembrane, score: 10.00.
  
     0.557
EEC97455.1
Outer membrane insertion signal domain protein; Psort location: OuterMembrane, score: 10.00.
  
     0.554
EEC95118.1
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; KEGG: bth:BT1548 1.6e-220 phosphoglucomutase phosphomannomutase K01840.
       0.547
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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