STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC95137.1Nodulation efficiency protein D; Psort location: CytoplasmicMembrane, score: 9.46. (156 aa)    
Predicted Functional Partners:
EEC95138.1
Hypothetical protein.
 
    0.973
EEC95136.1
Tetratricopeptide repeat protein.
       0.764
EEC95135.1
PP-loop family protein; KEGG: nme:NMB1023 6.2e-29 hypothetical protein K04075; Psort location: Cytoplasmic, score: 8.96; Belongs to the TtcA family.
       0.533
EEC95134.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.519
EEC95139.1
KEGG: pgi:PG1371 2.4e-107 phosphorylase family protein K00757; Psort location: Cytoplasmic, score: 8.96.
       0.517
EEC97694.1
Hypothetical protein; KEGG: ljo:LJ1840 3.7e-06 cell wall-associated serine proteinase K01361.
  
     0.485
EEC98314.1
UvrD/REP helicase; KEGG: hpa:HPAG1_1502 3.5e-24 ATP-dependent nuclease K01144; Belongs to the helicase family. UvrD subfamily.
 
     0.430
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
     0.427
EEC95746.1
MORN repeat protein; KEGG: chu:CHU_1410 4.4e-12 hypothetical protein K00689.
  
     0.414
EEC97176.1
KEGG: chu:CHU_1410 5.2e-08 hypothetical protein K00689.
  
     0.408
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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