STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpiAKEGG: bfs:BF3474 5.5e-76 putative ribose 5-phosphate isomerase K01807; Psort location: Cytoplasmic, score: 8.96. (231 aa)    
Predicted Functional Partners:
EEC97417.1
Transketolase, thiamine diphosphate binding domain protein; KEGG: bfr:BF1652 2.6e-298 transketolase K00615; Belongs to the transketolase family.
   
 0.844
prs
KEGG: pgi:PG2097 1.7e-136 prsA; ribose-phosphate pyrophosphokinase K00948.
  
 
 0.810
EEC97459.1
KEGG: pgi:PG1595 7.3e-42 rpe; ribulose-phosphate 3-epimerase K01783.
  
 0.807
EEC97460.1
Hypothetical protein; KEGG: bth:BT3946 1.3e-10 ribulose-phosphate 3-epimerase K01783.
  
 0.807
rpiB
KEGG: bfr:BF1651 5.9e-56 ribose 5-phosphate isomerase B K01808; Psort location: Cytoplasmic, score: 8.96.
     
 0.800
EEC95118.1
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; KEGG: bth:BT1548 1.6e-220 phosphoglucomutase phosphomannomutase K01840.
    
 0.775
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
    
 0.767
gnd
KEGG: bfs:BF1919 2.5e-103 gnd; 6-phosphogluconate dehydrogenase K00033; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.733
EEC97362.1
Putative phosphogluconate dehydrogenase (decarboxylating) domain protein; KEGG: pat:Patl_2110 1.2e-34 6-phosphogluconate dehydrogenase, decarboxylating K00033.
   
 
 0.733
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: bfs:BF0885 2.0e-165 gap; putative glyceraldehyde 3-phosphate dehydrogenase K00134; Psort location: Cytoplasmic, score: 9.97; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.631
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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