Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEC95141.1Nitroreductase family protein; KEGG: bth:BT2144 6.9e-85 putative oxidoreductase; Belongs to the flavin oxidoreductase frp family. (247 aa)    
Predicted Functional Partners:
EEC95142.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.678
EEC95143.1
4Fe-4S binding domain protein; KEGG: mka:MK0323 7.8e-07 fwd_F2; probable formylmethanofuran dehydrogenase subunit F, ferredoxin containing K00199; Psort location: Cytoplasmic, score: 8.96.
 
     0.550
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
    0.520
EEC97726.1
AMP-binding domain protein; KEGG: bfr:BF4466 6.8e-252 long-chain-fatty-acid-CoA ligase K01897; Psort location: Cytoplasmic, score: 9.26.
   
   0.443
EEC96897.1
KEGG: bfr:BF1321 3.2e-103 O-succinylbenzoic acid-CoA ligase K01911.
   
   0.443
EEC98525.1
Hypothetical protein; KEGG: bga:BG0261 0.0020 bacA; undecaprenyl-diphosphatase K06153; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.428
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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