STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC95142.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (396 aa)    
Predicted Functional Partners:
EEC95141.1
Nitroreductase family protein; KEGG: bth:BT2144 6.9e-85 putative oxidoreductase; Belongs to the flavin oxidoreductase frp family.
       0.679
EEC95143.1
4Fe-4S binding domain protein; KEGG: mka:MK0323 7.8e-07 fwd_F2; probable formylmethanofuran dehydrogenase subunit F, ferredoxin containing K00199; Psort location: Cytoplasmic, score: 8.96.
       0.541
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.541
EEC94991.1
Hypothetical protein.
  
     0.531
EEC94924.1
Hypothetical protein.
  
     0.507
EEC96801.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.450
EEC96532.1
Hypothetical protein.
  
     0.431
EEC94381.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.423
EEC95145.1
DNA binding domain, excisionase family.
 
     0.418
EEC94378.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.414
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.