Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EEC95143.14Fe-4S binding domain protein; KEGG: mka:MK0323 7.8e-07 fwd_F2; probable formylmethanofuran dehydrogenase subunit F, ferredoxin containing K00199; Psort location: Cytoplasmic, score: 8.96. (373 aa)    
Predicted Functional Partners:
EEC97198.1
Hydrogenase, Fe-only; KEGG: bth:BT0124 1.5e-206 NADH:ubiquinone oxidoreductase subunit K00336.
  
 
 0.921
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.779
EEC95141.1
Nitroreductase family protein; KEGG: bth:BT2144 6.9e-85 putative oxidoreductase; Belongs to the flavin oxidoreductase frp family.
 
     0.550
EEC95142.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.541
EEC97203.1
Hypothetical protein; KEGG: bth:BT0123 1.8e-31 NADH-ubiquinone oxidoreductase subunit K00334; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.537
EEC97197.1
Hypothetical protein; KEGG: bth:BT0123 2.3e-22 NADH-ubiquinone oxidoreductase subunit K00334; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.537
EEC96260.1
4Fe-4S binding domain protein; KEGG: dde:Dde_0081 4.0e-18 ferredoxin hydrogenase K00533.
   
 
 0.517
EEC94767.1
4Fe-4S binding domain protein; KEGG: cno:NT01CX_0464 4.8e-77 Fe-hydrogenase large subunit family protein K00532.
   
 
 0.517
EEC94912.1
Flavin reductase; KEGG: pfl:PFL_5938 7.5e-05 ssuE; NADH-dependent FMN reductase SsuE K00299.
 
   
 0.514
EEC95145.1
DNA binding domain, excisionase family.
       0.459
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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