STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC95143.14Fe-4S binding domain protein; KEGG: mka:MK0323 7.8e-07 fwd_F2; probable formylmethanofuran dehydrogenase subunit F, ferredoxin containing K00199; Psort location: Cytoplasmic, score: 8.96. (373 aa)    
Predicted Functional Partners:
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.871
EEC97199.1
4Fe-4S binding domain protein; KEGG: bth:BT0125 2.9e-70 NADH:ubiquinone oxidoreductase subunit K00335; Psort location: Cytoplasmic, score: 9.97.
    
 0.845
EEC97184.1
Respiratory-chain NADH dehydrogenase 51 Kd subunit; KEGG: bth:BT0125 1.9e-162 NADH:ubiquinone oxidoreductase subunit K00335; Psort location: Cytoplasmic, score: 9.97.
    
 0.845
EEC97198.1
Hydrogenase, Fe-only; KEGG: bth:BT0124 1.5e-206 NADH:ubiquinone oxidoreductase subunit K00336.
  
 
 0.842
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.781
EEC98559.1
KEGG: eci:UTI89_C2483 1.4e-15 napG; ferredoxin-type protein, subunit of nitrate reductase, periplasmic K02573.
 
 
  0.761
EEC94179.1
Hypothetical protein; KEGG: eci:UTI89_C2482 0.0040 napH; ferredoxin-type protein K02574; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
  0.758
EEC97827.1
2-oxoacid:acceptor oxidoreductase, alpha subunit; KEGG: pgi:PG0429 7.6e-237 pyruvate synthase K00174.
  
 
  0.736
rnfB
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
    
  0.694
EEC95141.1
Nitroreductase family protein; KEGG: bth:BT2144 6.9e-85 putative oxidoreductase; Belongs to the flavin oxidoreductase frp family.
 
     0.551
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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