Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEC95153.1DNA binding domain, excisionase family. (122 aa)    
Predicted Functional Partners:
EEC95154.1
Hypothetical protein.
 
     0.935
EEC95155.1
Hypothetical protein.
 
     0.853
EEC95145.1
DNA binding domain, excisionase family.
 
     0.777
EEC95157.1
Ribbon-helix-helix protein, CopG family; KEGG: cte:CT0095 0.0012 lysC; aspartokinase K00928; Psort location: Cytoplasmic, score: 8.96.
 
     0.767
EEC95158.1
Relaxase/mobilization nuclease domain protein.
 
     0.739
EEC95146.1
Site-specific recombinase, phage integrase family; Psort location: Cytoplasmic, score: 8.96; Belongs to the 'phage' integrase family.
  
     0.735
EEC98503.1
Hypothetical protein.
  
     0.730
EEC95114.1
DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.96.
 
     0.669
EEC97252.1
Hypothetical protein.
  
     0.668
EEC95027.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.645
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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