STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC94444.1TonB-linked outer membrane protein, SusC/RagA family; Psort location: OuterMembrane, score: 9.49. (774 aa)    
Predicted Functional Partners:
EEC94480.1
TonB-dependent receptor plug domain protein.
     0.955
EEC94445.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
 
     0.938
EEC98488.1
TonB-dependent receptor plug domain protein.
 
    0.858
EEC95119.1
TonB-dependent receptor plug domain protein.
 
     0.848
EEC94498.1
TonB-dependent receptor plug domain protein.
 
     0.814
EEC94478.1
SusD family protein.
 
     0.814
EEC98243.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
  
     0.774
EEC98270.1
SusD family protein.
  
     0.774
EEC95308.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.774
EEC98072.1
SusD family protein.
  
     0.773
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.