STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
accCacetyl-CoA carboxylase, biotin carboxylase subunit; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (528 aa)    
Predicted Functional Partners:
EEC97329.1
HMGL-like protein; KEGG: efa:EF3317 2.5e-71 carboxylase, putative K01571; Psort location: Cytoplasmic, score: 8.96.
 
 0.999
EEC94270.1
Biotin-requiring enzyme; KEGG: bth:BT1697 7.6e-281 pyruvate carboxylase subunit B K01960.
 0.999
EEC94314.1
Biotin-requiring enzyme; KEGG: pfu:PF0673 1.8e-13 methylmalonyl-CoA decarboxylase gamma chain K01606.
 
  
  0.980
EEC94313.1
Carboxyl transferase domain protein; KEGG: bfr:BF3531 6.6e-222 propionyl-CoA carboxylase beta chain K01966; Psort location: Cytoplasmic, score: 8.96.
 
 0.973
fabD
[acyl-carrier-protein] S-malonyltransferase; KEGG: pgi:PG0138 2.5e-119 fabD; malonyl CoA-acyl carrier protein transacylase K00645.
 
 
 0.945
fabHA-2
KEGG: bth:BT3834 4.8e-29 3-oxoacyl-[acyl-carrier-protein] synthase III K00648.
 
 
 0.909
EEC98306.1
biotin--[acetyl-CoA-carboxylase] ligase; KEGG: bfr:BF0704 1.5e-66 putative biotin-(acetyl-CoA carboxylase) synthetase K01947; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.907
EEC97617.1
Carboxyl transferase domain protein; KEGG: tma:TM0716 2.9e-166 propionyl-CoA carboxylase beta chain K01966; Psort location: Cytoplasmic, score: 8.96.
 
 0.907
EEC95875.1
Carboxyl transferase domain protein; KEGG: pgi:PG1612 8.2e-240 mmdA; methylmalonyl-CoA decarboxylase, alpha subunit K01966.
 
 0.905
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 0.888
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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