STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC94216.1Oligosaccharide biosynthesis protein Alg14 like protein; KEGG: gvi:gll3712 4.1e-16 probable glucosyltransferase EpsE homolog K07441. (139 aa)    
Predicted Functional Partners:
EEC94217.1
Glycosyltransferase family 28 C-terminal domain protein; KEGG: spo:SPAC56E4.02c 3.4e-06 conserved hypothetical protein K07432.
 
  
 0.976
murD
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
 
 0.875
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
 0.833
EEC98357.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.797
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 
 0.778
EEC94215.1
Glycosyltransferase, group 1 family protein; KEGG: mma:MM1142 3.7e-20 glycosyltransferase K00754.
 
  
 0.771
EEC98466.1
Mur ligase middle domain protein; KEGG: sco:SCO6060 3.5e-20 murC, SC9B1.07; putative UDP-N-acetylmuramoyl-L-alanine ligase K01924.
  
 
 0.752
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
  
 
 0.752
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
  
 0.748
ftsZ
KEGG: tma:TM0836 7.2e-58 ftsZ; cell division protein FtsZ K03531; Psort location: Cytoplasmic, score: 9.12.
  
 
 0.717
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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