STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC94192.1KEGG: bth:BT0105 7.1e-154 DNA topoisomerase I (Omega-protein) K03169. (532 aa)    
Predicted Functional Partners:
EEC96820.1
Toprim domain protein; KEGG: bfs:BF1254 3.9e-59 exc; putative transposon excision protein K03169.
 
     0.976
EEC95424.1
Toprim domain protein; KEGG: bfs:BF1254 2.0e-53 exc; putative transposon excision protein K03169.
 
     0.976
EEC95191.1
Toprim domain protein; KEGG: bth:BT0105 7.2e-58 DNA topoisomerase I (Omega-protein) K03169.
 
     0.976
EEC95864.1
HRDC domain protein; KEGG: pmn:PMN2A_0646 5.2e-10 exodeoxyribonuclease V K03581.
 
 0.835
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
   0.750
recQ-2
KEGG: bfr:BF4076 0. recQ; ATP-dependent DNA helicase RecQ K03654; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.682
recQ
KEGG: bfs:BF3249 9.9e-196 recQ2; putative ATP-dependent DNA helicase K03654.
 
 
 0.667
EEC97561.1
KEGG: bth:BT3938 1.3e-131 recQ; ATP-dependent DNA helicase RecQ K03654.
 
 
 0.655
EEC96503.1
KEGG: bth:BT3938 1.5e-144 recQ; ATP-dependent DNA helicase RecQ K03654; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.646
EEC95968.1
KEGG: eci:UTI89_C0417 1.8e-102 sbcC; exonuclease SbcC K03546; Psort location: Extracellular, score: 8.89.
  
 0.624
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.