Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEC94177.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (314 aa)    
Predicted Functional Partners:
EEC94176.1
DNA binding domain, excisionase family.
  
    0.782
EEC95114.1
DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.96.
  
    0.741
EEC97276.1
Hypothetical protein.
  
     0.677
EEC95052.1
DNA binding domain, excisionase family.
  
     0.666
EEC95054.1
KEGG: pto:PTO0700 2.9e-06 hypothetical phosphoserine phosphatase K01079; Psort location: Cytoplasmic, score: 8.96.
  
     0.650
EEC97977.1
Transporter, major facilitator family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.635
EEC95109.1
DNA-binding helix-turn-helix protein.
  
     0.628
EEC95064.1
Toxin-antitoxin system, antitoxin component, Xre family.
  
     0.621
EEC98504.1
Hypothetical protein; KEGG: rbe:RBE_1421 0.0083 holC; DNA polymerase III chi subunit HolC K02339.
 
     0.614
EEC95370.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.585
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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