STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC94174.14Fe-4S binding domain protein; KEGG: afu:AF1832a 1.5e-07 NADH dehydrogenase subunit I K00338; Psort location: Cytoplasmic, score: 8.96. (252 aa)    
Predicted Functional Partners:
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.898
EEC95811.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: btl:BALH_0703 3.2e-135 ndh; NADH dehydrogenase K00356; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.864
EEC95812.1
Hypothetical protein; Belongs to the sulfur carrier protein TusA family.
    
 0.840
EEC96881.1
Tat pathway signal sequence domain protein; KEGG: eci:UTI89_C2483 3.0e-15 napG; ferredoxin-type protein, subunit of nitrate reductase, periplasmic K02573; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.781
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.740
EEC97827.1
2-oxoacid:acceptor oxidoreductase, alpha subunit; KEGG: pgi:PG0429 7.6e-237 pyruvate synthase K00174.
  
 
 0.722
EEC97198.1
Hydrogenase, Fe-only; KEGG: bth:BT0124 1.5e-206 NADH:ubiquinone oxidoreductase subunit K00336.
    
 0.714
EEC94179.1
Hypothetical protein; KEGG: eci:UTI89_C2482 0.0040 napH; ferredoxin-type protein K02574; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
  0.701
EEC98559.1
KEGG: eci:UTI89_C2483 1.4e-15 napG; ferredoxin-type protein, subunit of nitrate reductase, periplasmic K02573.
 
  
  0.664
EEC97268.1
KEGG: bth:BT2403 4.5e-287 homoserine dehydrogenase.
    
  0.655
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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