STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC94152.1KEGG: bur:Bcep18194_B1406 1.1e-45 short-chain dehydrogenase/reductase SDR K00059; Psort location: Cytoplasmic, score: 9.97. (195 aa)    
Predicted Functional Partners:
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
   
 0.885
EEC98334.1
O-methyltransferase; KEGG: bfr:BF4481 3.3e-69 O-methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96.
 
  
 
 0.833
EEC96583.1
Glutamate synthase central domain protein; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
     
 0.827
EEC96556.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 8.3e-109 glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
     
 0.827
fabZ
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.819
fabF
Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.780
EEC96401.1
Transketolase, C-terminal domain protein; KEGG: bth:BT0312 0. 2-oxoisovalerate dehydrogenase alpha subunit / 2-oxoisovalerate dehydrogenase beta subunit K00166:K00167.
  
 0.777
fabD
[acyl-carrier-protein] S-malonyltransferase; KEGG: pgi:PG0138 2.5e-119 fabD; malonyl CoA-acyl carrier protein transacylase K00645.
 0.774
EEC94294.1
FAD linked oxidase, C-terminal domain protein; KEGG: rru:Rru_A1410 5.0e-222 4Fe-4S ferredoxin K00102; Psort location: Cytoplasmic, score: 8.96.
  
 0.750
EEC94895.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: bce:BC2781 6.6e-32 short chain dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
 
 0.740
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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