STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC94101.1Site-specific recombinase, phage integrase family. (200 aa)    
Predicted Functional Partners:
EEC98149.1
Hypothetical protein; ORF located using Blastx; Belongs to the 'phage' integrase family.
 
     0.799
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
  0.619
EEC95301.1
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.577
EEC95075.1
DNA binding domain, excisionase family.
  
     0.496
EEC95420.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.488
EEC95025.1
DNA binding domain, excisionase family.
  
     0.487
EEC97253.1
DNA binding domain, excisionase family.
  
     0.481
EEC95076.1
DNA binding domain, excisionase family; Psort location: Cytoplasmic, score: 8.96.
  
     0.416
Your Current Organism:
Parabacteroides johnsonii
NCBI taxonomy Id: 537006
Other names: P. johnsonii DSM 18315, Parabacteroides johnsonii DSM 18315, Parabacteroides johnsonii JCM 13406, Parabacteroides johnsonii M-165, Parabacteroides johnsonii str. DSM 18315, Parabacteroides johnsonii strain DSM 18315
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.