STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36881.1Cytidine and deoxycytidylate deaminase zinc-binding region; KEGG: bfr:BF0964 1.9e-57 deoxycytidylate deaminase K01493. (150 aa)    
Predicted Functional Partners:
dut
dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
  
 0.914
tdk
Thymidine kinase; KEGG: bfr:BF0659 2.6e-78 thymidine kinase K00857; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.899
EFB36832.1
KEGG: sru:SRU_1265 7.8e-61 deoxynucleoside kinase subfamily, putative K00924; Psort location: Cytoplasmic, score: 8.96.
   
 0.890
EFB36833.1
KEGG: sru:SRU_1265 1.2e-48 deoxynucleoside kinase subfamily, putative K00924.
   
 0.890
cmk
Cytidylate kinase; KEGG: bth:BT2060 1.2e-78 cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.96.
    
  0.873
EFB34378.1
Ser/Thr phosphatase family protein; KEGG: rsp:RSP_0955 1.5e-29 5'-nucleotidase K01081; Psort location: Periplasmic, score: 9.44.
    
  0.873
EFB36882.1
Peptidase family M3; KEGG: bfs:BF0884 2.8e-239 dcp; putative peptidyl-dipeptidase K01284; Psort location: Cytoplasmic, score: 9.97.
  
    0.826
thyX
Thymidylate synthase ThyX; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
    
  0.817
EFB36879.1
KEGG: bth:BT4258 5.9e-40 putative 5-formyltetrahydrofolate cyclo-ligase K01934; Psort location: Cytoplasmic, score: 8.96.
  
    0.745
EFB36880.1
Peptidase, S41 family; KEGG: bth:BT4259 5.7e-168 carboxy-terminal processing protease precursor K03797; Belongs to the peptidase S41A family.
       0.740
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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