STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36892.1KEGG: tde:TDE2402 0.0017 radical SAM domain protein K04069; Psort location: Cytoplasmic, score: 8.96. (311 aa)    
Predicted Functional Partners:
thiD
KEGG: bth:BT0790 3.0e-68 phosphomethylpyrimidine kinase K00877:K00941.
  
    0.774
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.705
mutS2
MutS2 family protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
       0.642
EFB36890.1
Thiamine monophosphate synthase/TENI; KEGG: chu:CHU_0246 2.4e-11 thiE; thiamine phosphate pyrophosphorylase K00788; Psort location: Cytoplasmic, score: 8.96.
       0.642
EFB36492.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: dvu:DVU2587 1.2e-13 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 9.46.
   
 
 0.531
nrdD
KEGG: bfs:BF3484 2.2e-166 putative anaerobic ribonucleoside-triphosphate reductase K00527; Psort location: Cytoplasmic, score: 8.96.
  
  
  0.470
EFB36786.1
Chloramphenicol O-acetyltransferase; This enzyme is an effector of chloramphenicol resistance in bacteria; Belongs to the chloramphenicol acetyltransferase family.
  
     0.408
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
     
 0.403
amt
Ammonium transporter; KEGG: ter:Tery_3993 5.0e-71 adenylate/guanylate cyclase K01769; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.400
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.