STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
miaAtRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (322 aa)    
Predicted Functional Partners:
miaA-2
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
  
  
 
0.905
EFB36918.1
Diacylglycerol kinase catalytic domain protein; KEGG: ana:all1876 3.9e-05 putative methylglyoxal synthase K01734.
       0.651
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: bth:BT4263 1.7e-136 glyceraldehyde 3-phosphate dehydrogenase K00134; Psort location: Cytoplasmic, score: 9.97; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.632
EFB36471.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.512
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
  
 0.481
EFB36915.1
Hypothetical protein.
       0.474
pheT
phenylalanine--tRNA ligase, beta subunit; KEGG: bfr:BF2565 9.8e-292 phenylalanyl-tRNA synthetase beta chain K01890; Psort location: Cytoplasmic, score: 9.26.
 
  
 0.466
EFB35494.1
KEGG: bfs:BF3908 7.2e-106 putative 5,10-methylenetetrahydrofolate reductase K00297; Psort location: Cytoplasmic, score: 8.96.
     
 0.433
mscL
Large conductance mechanosensitive channel protein; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
       0.420
EFB36429.1
Hydrolase, NUDIX family; KEGG: lmf:LMOf2365_0384 4.2e-14 MutT/nudix family protein; Psort location: Cytoplasmic, score: 8.96.
     
 0.414
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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