STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36919.1Cyclic nucleotide-binding domain protein; KEGG: eci:UTI89_C3860 9.2e-05 crp; CRP-cAMP transcriptional dual regulator K00924; Psort location: Cytoplasmic, score: 8.96. (234 aa)    
Predicted Functional Partners:
EFB36224.1
KEGG: ava:Ava_2150 2.8e-16 response regulator receiver signal transduction histidine kinase; Psort location: Cytoplasmic, score: 9.97.
  
 0.943
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
 0.894
EFB34847.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
    
 0.891
EFB35160.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: reh:H16_A0828 4.8e-41 cycS1; signal transduction histidine kinase containing a receiver domain (hybrid) and a PAS sensor domain; Psort location: CytoplasmicMembrane, score: 7.88.
 
 
 0.855
EFB35600.1
KEGG: ehi:224.t00010 6.0e-09 leucine rich repeat protein K01768.
    
 0.779
EFB35175.1
Hypothetical protein; KEGG: rfe:RF_1094 4.2e-07 6-pyruvoyl tetrahydropterin synthase K01737; Psort location: Cytoplasmic, score: 8.96.
    
  0.706
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.694
EFB36125.1
Response regulator receiver domain protein; KEGG: shn:Shewana3_3829 7.4e-24 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) K01745; Psort location: Cytoplasmic, score: 9.26.
 
 0.690
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.673
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.666
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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