STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36933.1Hypothetical protein; Psort location: Extracellular, score: 9.64. (1246 aa)    
Predicted Functional Partners:
EFB36836.1
Cellulase (glycosyl hydrolase family 5); KEGG: sde:Sde_2636 9.8e-38 DNA mismatch repair protein K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
  0.794
EFB36932.1
Pectinesterase; KEGG: chu:CHU_0744 9.4e-07 CHU large protein K01238; Psort location: Extracellular, score: 9.96.
 
 
 
0.766
EFB34718.1
GDSL-like protein; KEGG: chu:CHU_0721 4.0e-25 hypothetical protein K01238.
    
  0.719
EFB34056.1
Glycosyl hydrolase, family 43; KEGG: chu:CHU_2041 1.3e-95 CHU large protein; candidate polyfunctional acetylxylan esterase/b-xylosidase/A-L-arabinofuranosidase, CBM9 module, glycoside hydrolase family 43 protein and carbohydrate esterase family 6 protein K01238.
  
     0.611
EFB34675.1
Carbohydrate binding domain protein; KEGG: sus:Acid_2992 7.2e-90 alpha-N-arabinofuranosidase K01209.
  
  
  0.550
EFB34045.1
Glycosyl hydrolase, family 43; CBM9 module, Glycoside Hydrolase Family 8 protein and Carbohydrate Esterase Family 4 protein; KEGG: chu:CHU_1240 8.9e-72 CHU large protein; candidate bifunctional xylanase/esterase; CBM9 module, glycoside hydrolase family 8 protein and carbohydrate esterase family 4 protein K01238.
  
     0.540
EFB36845.1
Putative endoglucanase A; KEGG: sde:Sde_2636 2.0e-62 DNA mismatch repair protein K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
   0.529
EFB36934.1
Hypothetical protein.
       0.522
EFB36005.1
Pectinesterase; KEGG: sus:Acid_1249 5.7e-58 pectinesterase K01051; Psort location: Extracellular, score: 9.71.
  
  
 0.522
celA
KEGG: sde:Sde_2636 2.4e-50 DNA mismatch repair protein K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
   0.513
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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