STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36936.1Hypothetical protein; KEGG: rba:RB5312 4.2e-69 pel; pectate lyase K01728. (606 aa)    
Predicted Functional Partners:
EFB36005.1
Pectinesterase; KEGG: sus:Acid_1249 5.7e-58 pectinesterase K01051; Psort location: Extracellular, score: 9.71.
  
 0.958
EFB36937.1
Glycosyl hydrolase, family 88; KEGG: tma:TM0437 3.0e-75 exo-poly-alpha-D-galacturonosidase, putative K01238; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.942
EFB36932.1
Pectinesterase; KEGG: chu:CHU_0744 9.4e-07 CHU large protein K01238; Psort location: Extracellular, score: 9.96.
 
  
 0.885
EFB34556.1
GDSL-like protein; KEGG: bld:BLi04100 3.8e-36 hypothetical protein.
 
  
  0.810
EFB35327.1
Polygalacturonase (pectinase); KEGG: tma:TM0437 2.0e-64 exo-poly-alpha-D-galacturonosidase, putative K01238; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family.
  
  
 0.794
EFB36896.1
Polygalacturonase (pectinase); KEGG: tma:TM0437 1.8e-54 exo-poly-alpha-D-galacturonosidase, putative K01238; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family.
  
  
 0.782
EFB36928.1
Hypothetical protein.
 
     0.761
EFB36923.1
Glycosyl hydrolase, family 43; KEGG: bli:BL03023 2.5e-39 xynBB; xylan beta-1,4-xylosidase K01198; Belongs to the glycosyl hydrolase 43 family.
 
     0.760
EFB36924.1
Endo-polygalacturonase domain protein; KEGG: eca:ECA1095 7.2e-23 pehA; endo-polygalacturonase K01184; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family.
  
  
 0.751
EFB33946.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
  
  
  0.699
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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