STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeKEGG: bfr:BF3902 1.5e-71 ribulose-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 8.96. (217 aa)    
Predicted Functional Partners:
EFB36368.1
Transketolase, thiamine diphosphate binding domain protein; KEGG: bth:BT0347 2.2e-285 transketolase K00615; Belongs to the transketolase family.
 0.974
rpiB
KEGG: bth:BT0346 2.7e-51 ribose 5-phosphate isomerase B K01808; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.934
EFB34171.1
Carbohydrate kinase, FGGY family protein; KEGG: bth:BT0792 2.4e-192 xylulose kinase (xylulokinase) K00854.
 
  
 0.927
EFB36490.1
Kinase, PfkB family; KEGG: bth:BT0488 1.6e-154 2-dehydro-3-deoxygluconokinase K00874.
  
 0.915
EFB36364.1
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: bth:BT0353 2.2e-95 putative sugar epimerase/aldolase K03077.
     
 0.885
EFB35584.1
Kinase, PfkB family; KEGG: mta:Moth_0419 7.8e-61 pfkB; PfkB K00874.
  
 0.830
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
 0.790
EFB36907.1
KEGG: gka:GK3304 5.3e-126 mannose-6-phosphate isomerase (phosphomannose isomerase); mannose-1-phosphate guanylyl transferase (GDP-mannose pyrophosphorylase) K00971:K01809.
    
 0.749
EFB36941.1
Hypothetical protein.
       0.732
prs
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
 
 
 0.730
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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