STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36952.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (184 aa)    
Predicted Functional Partners:
EFB36951.1
Translocator protein, LysE family; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.815
EFB35232.1
Hypothetical protein.
  
    0.749
EFB36412.1
3'-5' exonuclease; KEGG: lic:LIC13263 4.7e-05 rnD; ribonuclease D K03684; Psort location: Cytoplasmic, score: 8.96.
  
     0.747
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
 
     0.736
EFB36562.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.694
EFB35485.1
Hypothetical protein; KEGG: ptr:470307 0.00018 ROCK2, LOC470307; Rho-associated, coiled-coil containing protein kinase 2 K04514.
  
     0.691
EFB33961.1
Antioxidant, AhpC/TSA family; KEGG: reh:H16_A0306 0.00069 bcp; peroxiredoxin K00435.
  
     0.645
EFB33863.1
Outer membrane protein, OMP85 family; Psort location: OuterMembrane, score: 9.49.
  
     0.638
EFB34040.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
     0.632
EFB36954.1
Chloride transporter, ClC family; KEGG: cpr:CPR_1400 9.7e-23 chloride channel protein K01529; Psort location: CytoplasmicMembrane, score: 10.00.
       0.620
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.