STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxAPyridoxal phosphate biosynthetic protein PdxA; KEGG: bfr:BF1080 2.0e-94 4-hydroxythreonine-4-phosphate dehydrogenase K00097; Belongs to the PdxA family. (365 aa)    
Predicted Functional Partners:
serC
Putative phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
     
 0.887
EFB36962.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.825
thrC
Threonine synthase; KEGG: bfs:BF0560 2.3e-180 thrC; threonine synthase K01733; Psort location: Cytoplasmic, score: 8.96.
    
  0.807
rlmN
23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs.
       0.797
EFB36960.1
Sigma-54 interaction domain protein; KEGG: reh:H16_B0538 7.6e-59 poxR; activator of phenol-degradative genes,PspF-family K01529.
 
     0.619
EFB36959.1
Hypothetical protein.
       0.618
EFB36965.1
Hypothetical protein; KEGG: eci:UTI89_C0457 9.3e-23 ampG; AmpG muropeptide MFS transporter K08218; Psort location: CytoplasmicMembrane, score: 10.00.
       0.553
EFB36964.1
SpoIID/LytB domain protein; KEGG: sat:SYN_00250 6.5e-105 glycosyltransferase K00754.
       0.525
EFB36958.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.517
secG
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
    0.496
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.