STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36962.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (311 aa)    
Predicted Functional Partners:
pdxA
Pyridoxal phosphate biosynthetic protein PdxA; KEGG: bfr:BF1080 2.0e-94 4-hydroxythreonine-4-phosphate dehydrogenase K00097; Belongs to the PdxA family.
  
    0.825
rlmN
23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs.
     
 0.815
EFB35650.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.775
EFB35411.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
     0.771
EFB35412.1
Hypothetical protein; Overlaps another CDS with the same product name.
  
     0.770
EFB35414.1
Transporter, MotA/TolQ/ExbB proton channel family protein; Psort location: CytoplasmicMembrane, score: 9.46.
  
     0.726
EFB35946.1
Hypothetical protein.
  
     0.663
EFB36958.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.619
EFB36959.1
Hypothetical protein.
  
    0.619
mreC
Rod shape-determining protein MreC.
  
 
 0.607
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.