STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmN23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. (355 aa)    
Predicted Functional Partners:
EFB36962.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
     
 0.815
pdxA
Pyridoxal phosphate biosynthetic protein PdxA; KEGG: bfr:BF1080 2.0e-94 4-hydroxythreonine-4-phosphate dehydrogenase K00097; Belongs to the PdxA family.
       0.797
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
 
  
 0.689
EFB35408.1
NOL1/NOP2/sun family protein; KEGG: lsl:LSL_0999 7.6e-47 putative 23S rRNA m(5)C methyltransferase K00599; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.673
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
 
  
 0.626
EFB36965.1
Hypothetical protein; KEGG: eci:UTI89_C0457 9.3e-23 ampG; AmpG muropeptide MFS transporter K08218; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.613
EFB36959.1
Hypothetical protein.
       0.603
EFB36964.1
SpoIID/LytB domain protein; KEGG: sat:SYN_00250 6.5e-105 glycosyltransferase K00754.
       0.561
EFB35775.1
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
   
 0.546
yqeV
tRNA methylthiotransferase YqeV; KEGG: bce:BC4308 2.6e-69 Fe-S oxidoreductase.
 
  
 0.529
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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