STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36964.1SpoIID/LytB domain protein; KEGG: sat:SYN_00250 6.5e-105 glycosyltransferase K00754. (1260 aa)    
Predicted Functional Partners:
EFB36965.1
Hypothetical protein; KEGG: eci:UTI89_C0457 9.3e-23 ampG; AmpG muropeptide MFS transporter K08218; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.905
EFB36524.1
Fibronectin type III domain protein.
 
     0.693
EFB34137.1
Sporulation and cell division repeat protein.
  
     0.670
EFB33716.1
Hypothetical protein.
  
     0.628
EFB36305.1
Hypothetical protein.
  
     0.606
EFB36885.1
Hypothetical protein.
  
     0.601
EFB36112.1
Hypothetical protein.
  
     0.584
EFB34962.1
Hypothetical protein.
  
    0.567
EFB36471.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
    0.562
rlmN
23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs.
       0.561
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.