STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFB36836.1Cellulase (glycosyl hydrolase family 5); KEGG: sde:Sde_2636 9.8e-38 DNA mismatch repair protein K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (444 aa)    
Predicted Functional Partners:
EFB35423.1
Glycosyltransferase family 36; KEGG: vfi:VF2147 5.8e-120 N,N'-diacetylchitobiose phosphorylase K00754; Psort location: CytoplasmicMembrane, score: 9.82.
  
  
 0.955
EFB34718.1
GDSL-like protein; KEGG: chu:CHU_0721 4.0e-25 hypothetical protein K01238.
 
 
 0.892
EFB35849.1
Hypothetical protein.
   
 
 0.864
EFB36837.1
Hypothetical protein; KEGG: bfr:BF0846 3.2e-32 mannan endo-1,4-beta-mannosidase K01218; Belongs to the glycosyl hydrolase 26 family.
     
 0.797
EFB36835.1
Hypothetical protein.
       0.774
EFB36865.1
Hypothetical protein.
  
 
 0.748
EFB35127.1
Hypothetical protein.
  
 
 0.748
EFB34159.1
Hypothetical protein; KEGG: chu:CHU_0834 8.9e-07 CHU large protein K01238.
  
 
 0.748
EFB35608.1
Glycosyl hydrolase, family 53; KEGG: sde:Sde_3710 1.9e-75 arabinogalactan endo-1,4-beta-galactosidase K01224.
 
  
 0.746
EFB34055.1
Glycosyl hydrolase, family 43; KEGG: pat:Patl_3728 4.2e-30 alpha-L-arabinofuranosidase K01209; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.743
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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