STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36845.1Putative endoglucanase A; KEGG: sde:Sde_2636 2.0e-62 DNA mismatch repair protein K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (516 aa)    
Predicted Functional Partners:
EFB36843.1
Hypothetical protein; KEGG: tma:TM1751 0.0033 endoglucanase K01179; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.779
EFB35849.1
Hypothetical protein.
   
  0.747
EFB34055.1
Glycosyl hydrolase, family 43; KEGG: pat:Patl_3728 4.2e-30 alpha-L-arabinofuranosidase K01209; Belongs to the glycosyl hydrolase 43 family.
  
     0.737
EFB36847.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
     0.731
EFB34056.1
Glycosyl hydrolase, family 43; KEGG: chu:CHU_2041 1.3e-95 CHU large protein; candidate polyfunctional acetylxylan esterase/b-xylosidase/A-L-arabinofuranosidase, CBM9 module, glycoside hydrolase family 43 protein and carbohydrate esterase family 6 protein K01238.
  
     0.722
EFB36848.1
SusD family protein.
 
 
   0.718
EFB35608.1
Glycosyl hydrolase, family 53; KEGG: sde:Sde_3710 1.9e-75 arabinogalactan endo-1,4-beta-galactosidase K01224.
 
  
 0.709
EFB35612.1
Pectate lyase; KEGG: bld:BLi04129 1.3e-25 hypothetical protein K00611; Psort location: Extracellular, score: 9.71.
  
    0.680
EFB36846.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
     0.640
EFB35085.1
Glycosyl hydrolase, family 43; KEGG: shm:Shewmr7_1980 3.9e-19 arabinan endo-1,5-alpha-L-arabinosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.627
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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