STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36851.1Transporter, small conductance mechanosensitive ion channel MscS family protein; Psort location: CytoplasmicMembrane, score: 10.00. (824 aa)    
Predicted Functional Partners:
kdsA
3-deoxy-8-phosphooctulonate synthase; KEGG: aae:aq_085 2.1e-67 kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) K01627; Psort location: Cytoplasmic, score: 8.96; Belongs to the KdsA family.
  
    0.682
EFB36850.1
Hypothetical protein; KEGG: gox:GOX1475 0.00049 putative N-acetylglucosamine kinase K00884; Psort location: Cytoplasmic, score: 8.96.
       0.678
EFB36046.1
CHC2 zinc finger domain protein; KEGG: rba:RB6344 0.00012 dnaG; DNA primase K02316.
  
    0.627
EFB36717.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.621
EFB36853.1
Sugar isomerase, KpsF/GutQ family; KEGG: cje:Cj1443c 1.7e-74 kpsF; KpsF protein K06041; Psort location: Cytoplasmic, score: 8.96; Belongs to the SIS family. GutQ/KpsF subfamily.
       0.597
EFB33995.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.579
EFB34159.1
Hypothetical protein; KEGG: chu:CHU_0834 8.9e-07 CHU large protein K01238.
  
     0.489
EFB36614.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
 
     0.488
EFB36854.1
Phospholipase D domain protein; KEGG: bfr:BF3733 2.2e-104 putative cardiolipin synthetase K01005.
       0.486
EFB34773.1
ATPase, AAA family; KEGG: mtp:Mthe_0613 3.6e-14 AAA family ATPase, CDC48 subfamily; Psort location: CytoplasmicMembrane, score: 7.88.
  
     0.479
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.