STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36816.1Hypothetical protein; Psort location: OuterMembrane, score: 9.49. (426 aa)    
Predicted Functional Partners:
EFB36819.1
Hypothetical protein; KEGG: chu:CHU_3268 1.0e-32 peptidyl-prolyl cis-trans isomerase K01802.
 
     0.879
EFB36817.1
Hypothetical protein.
 
    0.857
EFB34971.1
Hypothetical protein.
  
    0.767
EFB36599.1
Hypothetical protein.
  
     0.757
EFB36251.1
Hypothetical protein.
  
     0.756
EFB36139.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
  
   
 0.746
EFB36166.1
YbbR-like protein.
  
     0.742
EFB36008.1
Hypothetical protein.
  
     0.732
EFB36516.1
Hypothetical protein.
  
     0.730
EFB35576.1
PASTA domain protein; KEGG: mbo:Mb0014c 9.7e-08 pknB; transmembrane serine/threonine-protein kinase B PknB (protein kinase B) (StpK B) K08884; Psort location: Cytoplasmic, score: 8.96.
  
     0.727
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.