STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyYmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. (511 aa)    
Predicted Functional Partners:
EFB35496.1
PSP1 C-terminal domain protein; KEGG: ftf:FTF1227 2.6e-08 rne; ribonuclease E K08300.
 
  
 0.820
EFB36652.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.746
EFB36651.1
Hypothetical protein.
       0.734
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
 
 0.719
ribB
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.716
EFB36710.1
Hypothetical protein; KEGG: hpa:HPAG1_1355 1.2e-07 ATP/GTP binding protein; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.712
pfp
Diphosphate--fructose-6-phosphate 1-phosphotransferase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions.
  
 
 0.653
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
  
 
 0.653
tig
Trigger factor; KEGG: chu:CHU_1705 5.0e-50 tig; peptidyl-prolyl cis-trans isomerase, trigger factor K03545; Psort location: Cytoplasmic, score: 8.96.
  
   0.628
EFB34230.1
DEAD/DEAH box helicase; KEGG: eci:UTI89_C3590 3.4e-92 deaD, csdA, mssB, rhlD; cold-shock DEAD-box protein A K05592; Psort location: Cytoplasmic, score: 8.96; Belongs to the DEAD box helicase family.
   
 
 0.617
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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