STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36704.1KEGG: lpl:lp_2852 1.0e-28 4-carboxymuconolactone decarboxylase (putative) K01607. (252 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
  
  0.925
purB
KEGG: bfr:BF4018 7.8e-196 adenylosuccinate lyase K01756; Psort location: Cytoplasmic, score: 8.96.
  
 0.867
pepI
Prolyl aminopeptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family.
  
 
 0.821
EFB36705.1
KEGG: bcz:BCZK3497 4.2e-05 adaA; transcriptional regulator, AraC family K00567; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.710
EFB35551.1
Cupin domain protein; KEGG: psp:PSPPH_2917 8.7e-06 DNA-binding protein K00517; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.688
EFB34321.1
Rubredoxin; KEGG: sat:SYN_02123 8.2e-18 ferric-chelate reductase / rubredoxin K00521; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.590
EFB35924.1
acyl-CoA dehydrogenase, C-terminal domain protein; KEGG: bth:BT1806 7.5e-214 acyl-CoA dehydrogenase K00257; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.588
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.544
EFB35749.1
KEGG: bth:BT3936 1.1e-93 prephenate dehydratase K04518; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.518
EFB34072.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ava:Ava_2239 9.6e-62 adenylate/guanylate cyclase K01768; Psort location: CytoplasmicMembrane, score: 7.88.
  
 
 0.517
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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