STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36710.1Hypothetical protein; KEGG: hpa:HPAG1_1355 1.2e-07 ATP/GTP binding protein; Psort location: Cytoplasmic, score: 8.96. (425 aa)    
Predicted Functional Partners:
EFB36712.1
Ser/Thr phosphatase family protein; KEGG: mst:Msp_1010 6.1e-07 predicted phosphoesterase; Psort location: Cytoplasmic, score: 8.96.
       0.781
EFB36711.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.752
EFB36713.1
Hypothetical protein.
       0.752
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay.
 
 
 0.712
EFB36708.1
Hypothetical protein; KEGG: bth:BT2230 1.6e-09 DNA polymerase III alpha subunit K02337.
       0.584
EFB36709.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.543
EFB35416.1
Polyprenyl synthetase; KEGG: bfs:BF3533 9.3e-97 putative isoprenoid biosynthesis related protein K00787:K00795; Psort location: Cytoplasmic, score: 9.97; Belongs to the FPP/GGPP synthase family.
  
    0.536
EFB34324.1
Polyprenyl synthetase; KEGG: bfr:BF0092 1.6e-92 octaprenyl-diphosphate synthase K02523; Psort location: Cytoplasmic, score: 9.26; Belongs to the FPP/GGPP synthase family.
  
    0.536
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
 
 0.455
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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