STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCGlucuronate isomerase; KEGG: bth:BT0823 7.3e-200 uronate isomerase K01812. (467 aa)    
Predicted Functional Partners:
EFB36657.1
Mannitol dehydrogenase domain protein; KEGG: bth:BT0825 4.2e-188 altronate oxidoreductase K00041; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.975
EFB35427.1
KEGG: mta:Moth_0429 1.4e-141 mannitol dehydrogenase K00040.
 
 
 0.958
uxuA
Putative mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.953
EFB36364.1
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: bth:BT0353 2.2e-95 putative sugar epimerase/aldolase K03077.
     
 0.830
EFB36367.1
Alpha-L-arabinofuranosidase domain protein; KEGG: bth:BT0348 8.0e-210 alpha-L-arabinofuranosidase K01209; Psort location: Cytoplasmic, score: 9.26.
     
 0.813
EFB35183.1
Carbohydrate binding domain protein; KEGG: sus:Acid_2992 2.1e-74 alpha-N-arabinofuranosidase K01209.
     
 0.813
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.620
EFB36937.1
Glycosyl hydrolase, family 88; KEGG: tma:TM0437 3.0e-75 exo-poly-alpha-D-galacturonosidase, putative K01238; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.610
EFB36488.1
SAF domain protein; KEGG: bth:BT0486 2.4e-194 altronate hydrolase K01685.
 
  
 0.599
EFB36642.1
YihY family protein; KEGG: bth:BT1315 2.7e-58 ribonuclease BN; Psort location: CytoplasmicMembrane, score: 10.00.
       0.526
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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