STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36646.1Putative membrane protein; Psort location: CytoplasmicMembrane, score: 10.00. (262 aa)    
Predicted Functional Partners:
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.700
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.557
EFB36885.1
Hypothetical protein.
  
     0.548
EFB36342.1
Hypothetical protein.
       0.524
EFB35752.1
KEGG: bth:BT3933 6.2e-100 tyrA; prephenate dehydrogenase / chorismate mutase K00210:K01850.
  
   
 0.511
EFB36279.1
TonB-dependent receptor; Psort location: OuterMembrane, score: 9.49.
  
     0.476
EFB36429.1
Hydrolase, NUDIX family; KEGG: lmf:LMOf2365_0384 4.2e-14 MutT/nudix family protein; Psort location: Cytoplasmic, score: 8.96.
 
    0.475
EFB36905.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
  
     0.470
gldH
Gliding motility-associated lipoprotein GldH; Psort location: Cytoplasmic, score: 8.96.
  
     0.454
EFB36401.1
KEGG: cyb:CYB_1515 4.9e-06 tetratricopeptide repeat/protein kinase domain protein K08884.
  
     0.440
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.