STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36345.1Acetyltransferase, GNAT family; KEGG: bth:BT1079 3.2e-32 acetyltransferase K00657; Psort location: Cytoplasmic, score: 8.96. (169 aa)    
Predicted Functional Partners:
nifJ
Pyruvate synthase; KEGG: bfs:BF3168 0. nifJ; putative pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.96.
    
  0.888
EFB34847.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.732
EFB36346.1
KEGG: chu:CHU_1044 8.8e-69 b-glycosyltransferase, glycosyltransferase family 2 protein K00754.
       0.706
EFB35751.1
Putative 3-deoxy-7-phosphoheptulonate synthase; KEGG: bfs:BF3717 1.6e-142 putative chorismate mutase K04516:K03856; Psort location: Cytoplasmic, score: 8.96.
    
  0.694
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
    0.662
EFB36347.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.660
EFB36349.1
Hypothetical protein.
       0.648
EFB36907.1
KEGG: gka:GK3304 5.3e-126 mannose-6-phosphate isomerase (phosphomannose isomerase); mannose-1-phosphate guanylyl transferase (GDP-mannose pyrophosphorylase) K00971:K01809.
    
  0.552
EFB36350.1
Carbon starvation protein CstA; Psort location: CytoplasmicMembrane, score: 10.00.
       0.500
EFB35947.1
Hypothetical protein; KEGG: bth:BT3982 6.2e-139 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member K01144.
  
    0.484
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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