STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36350.1Carbon starvation protein CstA; Psort location: CytoplasmicMembrane, score: 10.00. (510 aa)    
Predicted Functional Partners:
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
    0.743
EFB36349.1
Hypothetical protein.
       0.729
EFB36347.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.727
EFB36344.1
Transporter, SSS family; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.677
EFB36346.1
KEGG: chu:CHU_1044 8.8e-69 b-glycosyltransferase, glycosyltransferase family 2 protein K00754.
  
    0.665
EFB36351.1
Hypothetical protein; KEGG: eci:UTI89_C1705 1.6e-28 yddW; hypothetical lipoprotein YddW precursor K01189.
       0.660
EFB35552.1
AMP-binding enzyme; KEGG: bfr:BF0528 6.7e-213 acetyl-coenzyme A synthetase K01895; Psort location: Cytoplasmic, score: 9.26.
   
    0.637
EFB36345.1
Acetyltransferase, GNAT family; KEGG: bth:BT1079 3.2e-32 acetyltransferase K00657; Psort location: Cytoplasmic, score: 8.96.
       0.500
EFB34072.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ava:Ava_2239 9.6e-62 adenylate/guanylate cyclase K01768; Psort location: CytoplasmicMembrane, score: 7.88.
   
  
 0.416
EFB34078.1
Transcriptional regulator, AraC family; KEGG: msm:MSMEG_3095 4.6e-11 D-ribose-binding periplasmic protein; Psort location: Periplasmic, score: 9.44.
   
  
 0.416
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.