STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36364.1Putative L-ribulose-5-phosphate 4-epimerase; KEGG: bth:BT0353 2.2e-95 putative sugar epimerase/aldolase K03077. (232 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.991
EFB34171.1
Carbohydrate kinase, FGGY family protein; KEGG: bth:BT0792 2.4e-192 xylulose kinase (xylulokinase) K00854.
  
 
 0.900
rpe
KEGG: bfr:BF3902 1.5e-71 ribulose-phosphate 3-epimerase K01783; Psort location: Cytoplasmic, score: 8.96.
     
 0.885
uxaC
Glucuronate isomerase; KEGG: bth:BT0823 7.3e-200 uronate isomerase K01812.
     
 0.830
EFB36366.1
Carbohydrate kinase, FGGY family protein; KEGG: lsa:LSA1859 3.2e-158 araB; L-ribulokinase K00853.
 
 
 0.811
EFB36363.1
Hydrolase, NUDIX family; KEGG: mma:MM1399 2.0e-11 MutT-like protein K01529.
  
    0.768
EFB35600.1
KEGG: ehi:224.t00010 6.0e-09 leucine rich repeat protein K01768.
   
  0.641
EFB36362.1
Transporter, SSS family; KEGG: vfi:VF2379 0.0052 sensory transduction protein kinase; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.625
EFB36361.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
  
 0.501
EFB34864.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.491
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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