STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (513 aa)    
Predicted Functional Partners:
EFB36364.1
Putative L-ribulose-5-phosphate 4-epimerase; KEGG: bth:BT0353 2.2e-95 putative sugar epimerase/aldolase K03077.
 
 
 0.991
EFB36367.1
Alpha-L-arabinofuranosidase domain protein; KEGG: bth:BT0348 8.0e-210 alpha-L-arabinofuranosidase K01209; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.946
EFB36366.1
Carbohydrate kinase, FGGY family protein; KEGG: lsa:LSA1859 3.2e-158 araB; L-ribulokinase K00853.
 
 
 0.925
EFB35183.1
Carbohydrate binding domain protein; KEGG: sus:Acid_2992 2.1e-74 alpha-N-arabinofuranosidase K01209.
 
 
 0.856
EFB36363.1
Hydrolase, NUDIX family; KEGG: mma:MM1399 2.0e-11 MutT-like protein K01529.
  
    0.650
EFB34889.1
KEGG: bth:BT3766 3.6e-111 rhamnulose-1-phosphate aldolase K01629.
  
 
 0.650
rhaA
KEGG: bth:BT3764 6.0e-157 L-rhamnose isomerase K01813; Psort location: Cytoplasmic, score: 8.96.
      
 0.595
EFB35757.1
Hypothetical protein; KEGG: sus:Acid_2992 1.2e-64 alpha-N-arabinofuranosidase K01209.
 
 
 0.580
EFB34377.1
Glycosyl hydrolase, family 43; KEGG: sde:Sde_1655 2.0e-110 translation initiation factor IF-1 K01209; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.560
EFB36362.1
Transporter, SSS family; KEGG: vfi:VF2379 0.0052 sensory transduction protein kinase; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.550
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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