STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36388.1Hypothetical protein; KEGG: lsl:LSL_0987 9.7e-13 rfaG; glycosyltransferase K00754. (291 aa)    
Predicted Functional Partners:
EFB36389.1
Hypothetical protein; KEGG: sfl:SF2099 3.6e-24 rfbF; DTDP-rhamnosyl transferase RfbF.
 
     0.937
EFB36392.1
Glycosyltransferase, group 2 family protein; KEGG: hit:NTHI2002 6.8e-46 lsgF; putative UDP-galactose--lipooligosaccharide galactosyltransferase; Psort location: Cytoplasmic, score: 8.96.
    
  0.789
EFB36390.1
Hypothetical protein; KEGG: ctc:CTC01739 7.0e-05 phosphoserine phosphatase K01079.
       0.773
EFB36391.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
EFB36903.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: csa:Csal_1693 6.7e-55 undecaprenyl-phosphate galactosephosphotransferase K00996; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.726
EFB34366.1
WD40-like protein.
  
     0.656
EFB36387.1
Chain length determinant protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.645
EFB36386.1
Chain length determinant protein; KEGG: bpm:BURPS1710b_A1960 2.9e-05 putative transport-related membrane protein K00903; Psort location: CytoplasmicMembrane, score: 9.46.
  
    0.538
EFB36648.1
Chain length determinant protein; KEGG: pgi:PG0436 5.2e-103 capsular polysaccharide transport protein, putative K00903; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.485
EFB36385.1
Polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.483
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.