STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36425.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (379 aa)    
Predicted Functional Partners:
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
     
 0.842
EFB34130.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.758
EFB35232.1
Hypothetical protein.
  
     0.712
EFB36268.1
Sporulation and cell division repeat protein; KEGG: pfo:Pfl_1900 2.7e-05 argininosuccinate synthase K03749.
  
     0.662
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
   0.634
EFB35724.1
Hypothetical protein.
  
     0.584
EFB34098.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.581
EFB36166.1
YbbR-like protein.
  
     0.575
EFB36427.1
Hypothetical protein.
       0.566
EFB34154.1
Hypothetical protein.
  
     0.542
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.