STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36454.1L-asparaginase, type I; KEGG: bfr:BF2658 3.7e-109 L-asparaginase I K01424. (343 aa)    
Predicted Functional Partners:
EFB34847.1
Class II glutamine amidotransferase; KEGG: bth:BT0553 0. glutamate synthase, large subunit K00265; Psort location: Cytoplasmic, score: 8.96.
    
 0.921
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
 0.908
EFB34481.1
KEGG: bth:BT2403 1.8e-299 homoserine dehydrogenase.
    
 0.891
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
   
 
 0.887
EFB36199.1
Aminotransferase, class I/II; KEGG: bfs:BF1601 7.7e-189 putative aspartate aminotransferase K00812.
    
 0.880
EFB34067.1
Aminotransferase, class I/II; KEGG: bfr:BF0595 9.4e-168 aspartate aminotransferase K00812.
    
 0.880
EFB36676.1
Amino acid kinase family; KEGG: bth:BT1375 3.6e-175 aspartokinase K00928; Belongs to the aspartokinase family.
  
  
 0.766
EFB35542.1
KEGG: bth:BT3760 5.2e-174 argininosuccinate synthase K01940; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.650
asnS
asparagine--tRNA ligase; KEGG: bfr:BF4016 2.3e-189 asparaginyl-tRNA synthetase K01893; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.531
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
  0.463
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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