STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36455.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (525 aa)    
Predicted Functional Partners:
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.788
EFB36471.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.772
EFB34202.1
Competence/damage-inducible domain protein CinA; Psort location: Cytoplasmic, score: 8.96; Belongs to the CinA family.
     
 0.769
EFB35049.1
Transcriptional regulator, Sir2 family; KEGG: bth:BT2975 4.9e-75 NAD-dependent deacetylase K01463.
   
 
  0.681
EFB35189.1
Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase H family.
  
     0.578
EFB36457.1
RelA/SpoT family protein; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.510
EFB36363.1
Hydrolase, NUDIX family; KEGG: mma:MM1399 2.0e-11 MutT-like protein K01529.
    
 0.494
EFB36007.1
Transglycosylase SLT domain protein; KEGG: bfs:BF0693 3.2e-126 putative lytic murein transglycosylase K08307.
  
  
  0.476
EFB36684.1
Sporulation and cell division repeat protein.
  
     0.467
nadC
Nicotinate-nucleotide diphosphorylase (carboxylating); KEGG: bfs:BF1400 3.3e-117 nadC; putative nicotinate-nucleotide pyrophosphorylase [carboxylating] (quinolinate phosphoribosyltransferase [decarboxylating]) K00767; Psort location: Cytoplasmic, score: 9.97; Belongs to the NadC/ModD family.
     
 0.463
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.