STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB36279.1TonB-dependent receptor; Psort location: OuterMembrane, score: 9.49. (803 aa)    
Predicted Functional Partners:
EFB36602.1
Hypothetical protein.
 
     0.792
EFB33666.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.774
EFB35167.1
Hypothetical protein.
  
     0.770
EFB34954.1
Two component regulator propeller.
  
     0.770
EFB35418.1
Hypothetical protein.
  
     0.769
EFB35166.1
Hypothetical protein.
  
     0.767
EFB34128.1
Tetratricopeptide repeat protein.
  
     0.765
EFB33839.1
Hypothetical protein.
  
     0.762
EFB36475.1
Hypothetical protein.
  
     0.761
EFB34059.1
Hypothetical protein.
  
     0.761
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.