STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
panCPantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (285 aa)    
Predicted Functional Partners:
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
 0.998
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
 
 
 0.998
EFB34358.1
Putative pantothenate kinase; Similar to putative CG5725-PE; KEGG: saa:SAUSA300_2084 2.4e-12 coaA; pantothenate kinase K00867.
     
 0.941
coaBC
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; KEGG: bth:BT1362 3.6e-143 flavoprotein K01598:K01922; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.925
cmk
Cytidylate kinase; KEGG: bth:BT2060 1.2e-78 cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.96.
   
  0.924
EFB36304.1
Starch synthase catalytic domain protein; KEGG: chu:CHU_3836 4.7e-54 glgA; glycogen synthase-related protein K00703; Psort location: Cytoplasmic, score: 8.96.
  
    0.654
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 0.614
EFB34562.1
Hypothetical protein; KEGG: pfu:PF1715 0.00030 pyrroline-5-carboxylate reductase K00286.
 
  
 0.613
EFB36305.1
Hypothetical protein.
       0.601
EFB35482.1
KEGG: bfs:BF0632 2.1e-58 putative biotin/lipoate A/B protein ligase family protein K01947.
  
 
 0.593
Your Current Organism:
Prevotella copri
NCBI taxonomy Id: 537011
Other names: P. copri DSM 18205, Prevotella copri CB7, Prevotella copri DSM 18205, Prevotella copri JCM 13464, Prevotella copri str. DSM 18205, Prevotella copri strain DSM 18205
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